Microarrays

ScanAlyze

Process fluorescent images of microarrays. Includes semi-automatic definition of grids and complex pixel and spot analyses. Outputs to tab-delimited text files for transfer to any database. Written by Michael Eisen.

http://rana.lbl.gov/EisenSoftware.htm

Cluster and TreeView

Cluster and TreeView are an integrated pair of programs for analyzing and visualizing the results of complex microarray experiments. Both written by Michael Eisen.

http://rana.lbl.gov/EisenSoftware.htm

JExpress

J-Express is a java application for the analysis of gene expression data provided by microarray experiments. It is programmed for the java runtime environment 1.2, which is available for most operating systems. J-Express has been developed in the bioinformatics research group at the Dept. of Informatics, UoB by Bjarte Dysvik and Inge Jonassen.

http://www.ii.uib.no/~bjarted/jexpress/

The MGuide. Version 2.0

The Brown Lab's complete guide to microarraying for the molecular biologist

http://cmgm.stanford.edu/pbrown/mguide/